PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7859_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 344aa    MW: 38684.5 Da    PI: 5.1438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7859_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07191237554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +  rE++ R+ +N++f  L ++l +    + +K +K +iL  A++ +++L
  RrC7859_p2 191 KAGREKKKREMLNDKFMDLSSVLEPT---RTPKTDKPAILDDAIRVVNQL 237
                 5669*********************9...9****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.788186237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-5192237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-5192243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-10194259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-6194238No hitNo description
SuperFamilySSF474596.94E-11194261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
IYFPLHTVST YICLLLLCVS LSPLTILHTL RFCIHSLMMY QSNEDDDDLF ASLCFDHHSN  60
GGEDPYAFIQ TDQENLFPEF GLNLQPEQDH HVCTVGGDQF DSFSGDNNGL GGPFGGLVYS  120
IGSSAQLDLG THSFRGTAST HVQQEQEQER ACCPVVEINS SSSVEVFKEE FEEECSRKRG  180
RTGPCSKPGT KAGREKKKRE MLNDKFMDLS SVLEPTRTPK TDKPAILDDA IRVVNQLRGE  240
AHELKETNQM LLEEIKSLKA EKNELREEKM VLKSDKEKME QQMRSMAAVP SPGFMPSHPA  300
AFHQNKMAVY GSYGYYPNMP VMPYLLPPSQ RDTSQDQQNW SKAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176198RKRGRTGPCSKPGTKAGREKKKR
2192200GREKKKREM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00372DAPTransfer from AT3G23210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746852.11e-175PREDICTED: transcription factor bHLH34-like
RefseqXP_013639210.11e-175PREDICTED: transcription factor bHLH34-like
SwissprotQ9LTC71e-120BH034_ARATH; Transcription factor bHLH34
TrEMBLA0A0D3ABB40.0A0A0D3ABB4_BRAOL; Uncharacterized protein (Fragment)
STRINGBra014923.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40262653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23210.11e-99bHLH family protein